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aaron ff1b92acc4 Switch over to the GenomeAnalysisEngine/CommandLineGATK system from the GenomeAnalysisTK code. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@655 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-05-11 22:05:58 +00:00
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config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting Switch over to the GenomeAnalysisEngine/CommandLineGATK system from the GenomeAnalysisTK code. 2009-05-11 22:05:58 +00:00
test/org/broadinstitute/sting Switch over to the GenomeAnalysisEngine/CommandLineGATK system from the GenomeAnalysisTK code. 2009-05-11 22:05:58 +00:00