fee9b367e4
-- Enables further sophisticated optimizations, as this class can be smarter about storing the data and will directly support operations like subset to samples -- All instances in the gatk that used Map<String, Genotype> now use GenotypeMap type. -- Amazingly, there were many places where HashMap<String, Genotype> is used, so that the order of the genotypes is technically undefined and could be dangerous. Now everything uses GenotypeMap with a specific ordering of samples (by name) -- Integrationtests updated and all pass |
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