Mark DePristo fee8d86f63 VariantEval optimization ... -- Use a LinkedHashMap not a TreeMap so iteration is faster. -- Note that with a lot of stratifications the update0 is taking up a lot of time. For example, with 822 samples and functional class and sample on there are 100K contexts and 30% of the runtime is just in the update0 call		2012-03-22 22:13:24 -04:00
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net/sf	Merged bug fix from Stable into Unstable	2012-02-13 16:37:11 -05:00
org/broadinstitute/sting	VariantEval optimization	2012-03-22 22:13:24 -04:00