gatk3的最后一个经典版本3.8

Mark DePristo fee8d86f63 VariantEval optimization ... -- Use a LinkedHashMap not a TreeMap so iteration is faster. -- Note that with a lot of stratifications the update0 is taking up a lot of time. For example, with 822 samples and functional class and sample on there are 100K contexts and 30% of the runtime is just in the update0 call		2012-03-22 22:13:24 -04:00
public	VariantEval optimization	2012-03-22 22:13:24 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00