Ryan Poplin fedc4fde6c Merged bug fix from Stable into Unstable		2012-11-25 21:55:55 -05:00
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bqsr	Soft clipped bases shouldn't be counted in the delocalized BQSR.	2012-11-25 21:55:29 -05:00
compression/reducereads	Co-Reduction implementation in ReduceReads	2012-11-14 10:33:21 -05:00
genotyper	Updating integration tests	2012-11-06 22:23:05 -08:00
haplotypecaller	Lots more GGA fixes for the HC now that I understand what's going on internally. Integration tests pass except for the GGA test which I believe now produces better results.	2012-11-20 16:13:29 -05:00