Matt Hanna fec495e292 Fix a nasty little bug in the sharding system: if the last shard in contig n ... overlaps exactly on disk with the first shard in contig n+1, the shards would be merged together to avoid duplicate extraction. Unfortunately, the interval overlap filter couldn't handle shards spanning contigs, and was choosing to filter out reads from contig n+1 which should have been included. I'm not completely sure why the BAM indexing code would ever specify that the end of one chromosome had the same on-disk location as the start of the next one. I suspect that this is a indexer performance bug.		2011-07-26 15:43:20 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Fix a nasty little bug in the sharding system: if the last shard in contig n	2011-07-26 15:43:20 -04:00
test	Max of 1000 records will be loaded and compared to avoid heap size problem.	2011-07-25 14:58:31 -04:00