gatk3的最后一个经典版本3.8

Matt Hanna fec495e292 Fix a nasty little bug in the sharding system: if the last shard in contig n ... overlaps exactly on disk with the first shard in contig n+1, the shards would be merged together to avoid duplicate extraction. Unfortunately, the interval overlap filter couldn't handle shards spanning contigs, and was choosing to filter out reads from contig n+1 which should have been included. I'm not completely sure why the BAM indexing code would ever specify that the end of one chromosome had the same on-disk location as the start of the next one. I suspect that this is a indexer performance bug.		2011-07-26 15:43:20 -04:00
public	Fix a nasty little bug in the sharding system: if the last shard in contig n	2011-07-26 15:43:20 -04:00
settings	Default values now displayed in arguments	2011-07-24 22:56:55 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2011-07-25 15:21:17 -04:00
ivy.xml	Runs and emits an HTML document	2011-07-20 17:16:33 -04:00