chartl fe6d810515 Some basic commits that I've been sitting on for a while now: ... @ PooledGenotypeConcordance - changes to output, now also reports false-negatives and false-positives as interesting sites. It's been like this in my directory for ages, just never committed. @NQSExtendedGroupsCovariantWalker - change for formatting. @NQSTabularDistributionWalker - breaks out the full (window_size)-dimensional empirical error rate distribution by the window. So if you've got a window of size 3; the quality score sequences 22 25 23 and 22 25 24 have their own bins (each of the 40^3 sequences get one) for match and mismatch counts. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1730 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-25 19:35:50 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Some basic commits that I've been sitting on for a while now:	2009-09-25 19:35:50 +00:00
test/org/broadinstitute/sting	delete the integration test temp files when the test is over	2009-09-25 16:34:08 +00:00