Ryan Poplin 981b78ea50 Changing the VQSR command line syntax back to the parsed tags approach. This cleans up the code and makes sure we won't be parsing the same rod file multiple times. I've tried to update the appropriate qscripts.		2011-09-12 12:17:43 -04:00
..
examples	Fixed example unified genotyper pipeline to wrap filter expressions with quotes and use rod binding name "variant" instead of "vcf".	2011-08-03 02:21:01 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Just cleaning up	2011-09-07 13:32:40 -04:00
GATKResourcesBundle.scala	Updating resource bundle generation qscript for changeover to git	2011-08-08 12:35:39 -04:00
MethodsDevelopmentCallingPipeline.scala	Changing the VQSR command line syntax back to the parsed tags approach. This cleans up the code and makes sure we won't be parsing the same rod file multiple times. I've tried to update the appropriate qscripts.	2011-09-12 12:17:43 -04:00
PacbioProcessingPipeline.scala	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00