Ryan Poplin 5dd811f84a Adding genotype given alleles mode to the HaplotypeCaller.		2012-05-30 15:07:01 -04:00
..
alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
gatk	DiagnoseTargets with working Q1,Median,Q3	2012-05-29 10:16:45 -04:00
jna	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
utils	Adding genotype given alleles mode to the HaplotypeCaller.	2012-05-30 15:07:01 -04:00
BaseTest.java	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
MD5DB.java	Made GQ an int, not a float. Updated VC code and lots of corresponding MD5s	2012-05-28 20:20:05 -04:00
MD5Mismatch.java	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Made GQ an int, not a float. Updated VC code and lots of corresponding MD5s	2012-05-28 20:20:05 -04:00