gatk3的最后一个经典版本3.8

Guillermo del Angel fdf607c3a9 One-off walker but techdev may find it useful and expand on it: given a BAM, output series of intervals to file (as interval_list [default] or BED [if -bed used]) where there is coverage. Additionally, print out to stdout at the end total covered bases and total covered bases including soft-clips		2012-05-31 20:47:37 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Malformed VCF headers should be User Errors	2012-05-31 16:05:53 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Fixing some problems with the binary release tests	2012-05-29 16:29:22 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00