ebanks 9b2fcc4711 Refactoring of the annotation system: ... 1. VA is now a ROD walker so it no longer requires reads (needs a little more testing) 2. Annotations can now represent multiple INFO fields (i.e. sets of key/value pairs) 3. The chromosome count annotations have been pulled out of UG and the VCF writer code and into VA where they belong. Fixed the headers too. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3513 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-09 17:05:51 +00:00
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filters	Initial commit of tools under development for data QC through firehose.	2010-02-12 19:13:24 +00:00
refdata	VCF moved over to tribble.	2010-05-05 17:28:48 +00:00
tools	For dealing with slightly malformatted BAMs - mark every alignment as primary, or in the case of some BAM files from UWash, supply the sample information for each read group.	2010-05-10 15:17:05 +00:00
walkers	Refactoring of the annotation system:	2010-06-09 17:05:51 +00:00