Mark DePristo 4107636144 VariantEval updates ... -- Performance optimizations -- Tables now are cleanly formatted (floats are %.2f printed) -- VariantSummary is a standard report now -- Removed CompEvalGenotypes (it didn't do anything) -- Deleted unused classes in GenotypeConcordance -- Updates integration tests as appropriate		2011-11-23 13:02:07 -05:00
..
datasources	First pass of the asynchronous block loader.	2011-11-18 15:02:59 -05:00
executive	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
filters	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
iterators	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00
refdata	Merge with master	2011-11-19 09:56:06 -05:00
report	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
samples	Fixed bad expected value in PedReaderUnitTest	2011-10-06 08:16:47 -07:00
traversals	First pass of the asynchronous block loader.	2011-11-18 15:02:59 -05:00
walkers	VariantEval updates	2011-11-23 13:02:07 -05:00
EngineFeaturesIntegrationTest.java	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
GenomeAnalysisEngineUnitTest.java	Allow processing of empty intervals, but warn user when this case is encountered.	2011-10-28 12:12:14 -04:00
WalkerManagerUnitTest.java	Moving more tools over to use the standard VC arg collection. Also, while I'm in there, I removed all of the empty references to @Requires given that it's no longer relevant.	2011-08-10 12:20:18 -04:00