ebanks fdaac4aa78 As the VCF guru, I'll take this one for Andrey. Someone has actually found a deletion at the beginning of the chromosome. Instead of failing with an ArrayIndexOutOfBoundsException, just don't try to print out the record. Our VCF writer doesn't really support this case (yet). ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4199 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-03 03:27:43 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	As the VCF guru, I'll take this one for Andrey. Someone has actually found a deletion at the beginning of the chromosome. Instead of failing with an ArrayIndexOutOfBoundsException, just don't try to print out the record. Our VCF writer doesn't really support this case (yet).	2010-09-03 03:27:43 +00:00
test	Bug fix in VariantRecalibrator. Only add sample names from the input rod bindings, not from all rod bindings.	2010-09-02 21:12:09 +00:00