Mauricio Carneiro fd540592ab Added RMS calculation for consensus MQ ... Consensus MQ is now the average of the RMS of the mapping qualities of the reads making each site.		2011-08-30 02:45:20 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Added RMS calculation for consensus MQ	2011-08-30 02:45:20 -04:00