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arguments
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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable
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2011-08-16 16:26:33 -04:00 |
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contexts
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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datasources
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Merged bug fix from Stable into Unstable
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2011-09-12 21:54:11 -04:00 |
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examples
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GATKDocsExample walker
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2011-08-11 11:01:21 -04:00 |
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executive
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Forgot to delete previous call
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2011-09-07 12:54:52 -04:00 |
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filters
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Adding documentation before the release for GATK wiki page
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2011-09-15 13:56:23 -04:00 |
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io
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Fixed broken RodBinding defaults.
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2011-08-11 08:58:30 -04:00 |
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iterators
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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phonehome
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Moved ResolveHostname to general utils as a static function
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2011-08-28 12:04:16 -04:00 |
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refdata
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Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.
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2011-09-06 20:39:42 -04:00 |
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report
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Fix for disallowed characters in GATKReportTable
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2011-08-26 13:24:06 -04:00 |
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traversals
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At least 2 minutes must pass before a status message is printed, further stabilizing time estimates
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2011-09-07 13:13:07 -04:00 |
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walkers
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Updating docs to include more details
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2011-09-15 16:25:03 -04:00 |
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CommandLineExecutable.java
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Removed -B support. Now explodes with error if -B provided.
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2011-08-16 16:13:47 -04:00 |
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CommandLineGATK.java
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Only concrete classes are now documented
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2011-08-18 14:04:47 -04:00 |
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DownsampleType.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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DownsamplingMethod.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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GenomeAnalysisEngine.java
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Now with accurate javadoc
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2011-08-22 17:25:15 -04:00 |
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ReadMetrics.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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ReadProperties.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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WalkerManager.java
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Removed support for RMD in @Requires and @Allows
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2011-08-03 15:36:55 -04:00 |
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package-info.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
fd1831b4a5