Mauricio Carneiro fcc21180e8 Added hardClipLeadingInsertions UnitTest for the ReadClipper ... fixed issue where a read starting with an insertion followed by a deletion would break, clipper can now safely clip the insertion and the deletion if that's the case. note: test is turned off until contract changes to allow hanging insertions (left/right).		2011-12-16 18:02:47 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Added hardClipLeadingInsertions UnitTest for the ReadClipper	2011-12-16 18:02:47 -05:00