Mauricio Carneiro fcc21180e8 Added hardClipLeadingInsertions UnitTest for the ReadClipper ... fixed issue where a read starting with an insertion followed by a deletion would break, clipper can now safely clip the insertion and the deletion if that's the case. note: test is turned off until contract changes to allow hanging insertions (left/right).		2011-12-16 18:02:47 -05:00
..
R	scales=free shows variance within analysis better	2011-12-07 14:09:32 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Added hardClipLeadingInsertions UnitTest for the ReadClipper	2011-12-16 18:02:47 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Support for NT testing (default up to 4) for CC and UG	2011-12-14 18:45:00 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00