gatk3的最后一个经典版本3.8

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Khalid Shakir fcb0eca203 Now passing in the path to the GATK directory to tests. Changed tests and scripts to use gatkdir full path instead of relative testdata/qscripts symbolic links. Although symlinks not created, left the symlink deletion script execution with a comment about future removal. Re-enabled example UG pipeline queue test. Replaced all hardcoded strings of {public,private}/testdata with BaseTest variables. Refactored temp list creation method from ListFileUtilsUnitTest to BaseTest.createTempListFile. Removed list files with hardcoded paths, now using createTempListFile instead with private test dir variable.		2014-09-02 01:40:59 +08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00
public	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/