hanna e53432d54d Checkpoint for combining adjacent intervals into the same shard. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2782 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-05 02:48:02 +00:00
..
BAMBlockIterator.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
BAMChunkIterator.java	First successful test of new sharding system prototype. Can traverse over reads from a single	2010-01-15 03:35:55 +00:00
BAMFileHeaderLoader.java	First successful test of new sharding system prototype. Can traverse over reads from a single	2010-01-15 03:35:55 +00:00
BAMFileIndex2.java	Checkpoint for combining adjacent intervals into the same shard.	2010-02-05 02:48:02 +00:00
BAMFileReader2.java	Checkpoint for combining adjacent intervals into the same shard.	2010-02-05 02:48:02 +00:00
Bin.java	Checkpoint for combining adjacent intervals into the same shard.	2010-02-05 02:48:02 +00:00
Block.java	A rethink of the existing BAM block extraction code: rather than working in	2009-12-30 18:19:51 +00:00
BlockReader.java	A rethink of the existing BAM block extraction code: rather than working in	2009-12-30 18:19:51 +00:00
BlockSegment.java	First successful test of new sharding system prototype. Can traverse over reads from a single	2010-01-15 03:35:55 +00:00
BlockTestHarness.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
Chunk.java	Add an alternate implementation of the BAM file reader that keeps the entire index in memory. Initial revision of BAMFileStat, a tool to inspect BAM file BGZF blocks and index entries.	2010-02-03 19:48:15 +00:00
LinearIndex.java	Add an alternate implementation of the BAM file reader that keeps the entire index in memory. Initial revision of BAMFileStat, a tool to inspect BAM file BGZF blocks and index entries.	2010-02-03 19:48:15 +00:00
SAMFileReader2.java	Checkpoint for combining adjacent intervals into the same shard.	2010-02-05 02:48:02 +00:00