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Phillip Dexheimer fc67e50faa Revved Picard/htsjdk 
Removed inefficient array->List conversion in AlleleCountBySample
 		2014-10-30 21:16:25 -04:00
..
VectorPairHMM Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
c After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive. 2014-05-19 17:36:41 -04:00
chainFiles The contig is named MT not M in b36. Delivers PT68890442. 2014-04-08 10:03:47 -04:00
doc Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
external-example Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gatk-engine Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gatk-queue Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gatk-queue-extensions-generator Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gatk-queue-extensions-public Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gatk-root Revved Picard/htsjdk 2014-10-30 21:16:25 -04:00
gatk-tools-public Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gatk-utils Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
gsalib Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
java/config Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
package-tests Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
repo Revved Picard/htsjdk 2014-10-30 21:16:25 -04:00
src/main/scripts/shell For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase. 2014-06-25 02:32:15 +08:00
pom.xml Update pom versions to mark the start of GATK 3.4 development 2014-10-23 22:31:44 -04:00