gatk-3.8/scala/qscript/chartl
chartl cb0b2f9811 My analysis script for private mutations. I'm committing it because it contains a number of specialized command line functions that could prove useful in the future. (For example: ConcatVCF and ExtractSample)
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4626 348d0f76-0448-11de-a6fe-93d51630548a
2010-11-04 19:57:27 +00:00
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RefineGenotypesAndMerge.q Commit for Ryan 2010-10-05 19:04:10 +00:00
fullCallingPipelineV2.q Somewhat major update. Changes: 2010-10-08 13:30:28 +00:00
omni_qc.q Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array. 2010-11-03 19:23:03 +00:00
private_mutations.q My analysis script for private mutations. I'm committing it because it contains a number of specialized command line functions that could prove useful in the future. (For example: ConcatVCF and ExtractSample) 2010-11-04 19:57:27 +00:00