gatk-3.8/java
chartl fbf82526cb Minor renamign changes.
PlinkRodWithGenomeLoc now supports .bed file parsing (and doesn't require |c#_p# conventions for SNPs -- still requires _g[I/D] for indels)



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2663 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-22 23:06:32 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Minor renamign changes. 2010-01-22 23:06:32 +00:00
test/org/broadinstitute/sting ant clean is your friend....fixed test code dependent on an interface change. 2010-01-22 20:07:46 +00:00