hanna f275be6968 A 'fat shard' finder. Cranks through the indices of a BAM file or list of ... BAM files looking for outliers (outliers right now are defined naively as shards whose sizes are more than 5 stddevs away from the mean). Runs in 13 minutes per chromosome on 707 low pass whole genome BAMs -- not great, but much faster than running UG on the same region to discover anomalies. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5782 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-10 12:56:47 +00:00
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net/sf	Did some refactoring which broke some unit tests, and then failed to run	2011-04-08 03:31:52 +00:00
org/broadinstitute/sting	A 'fat shard' finder. Cranks through the indices of a BAM file or list of	2011-05-10 12:56:47 +00:00