gatk3的最后一个经典版本3.8

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Ryan Poplin fbc75c8e14 Merge pull request #654 from broadinstitute/rp_gvcf_indexing_strategy Adding the required GVCF indexing strategy arguments.		2014-06-12 10:45:25 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #646 from broadinstitute/ks_disable_distribution_with_private	2014-06-11 11:00:31 -04:00
public	For XHMM and Depth-of-Coverage Qscripts, add ability for user to input sample renaming file at the GATK level using existing GATK flag (--sample_rename_mapping_file) and custom pre-processing code. For XHMM Qscript, add scatter-gather for Discovery and Genotype stages.	2014-06-09 23:49:54 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/