Mark DePristo b0c2f223ab Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable		2011-12-19 10:45:27 -05:00
..
R	Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R	2011-12-19 10:08:38 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	- Corrected bug causing cases where both parents are HET to be accounted twice in the TDT calculation - Adapted TDT Integration test to corrected version of TDT	2011-12-19 10:30:59 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Removing cruft that snuck in last commit.	2011-12-16 23:00:16 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00