gatk-3.8/public/java
Mark DePristo fb1911a1b6 -- Convenience constructor for VariantContextBuilder that creates a new one based on an existing builder
-- Convenience routine for creating alleles from strings of bases
-- Convenience constructor for VCFFilterHeader line whose description is the same as name
-- VariantContextTestProvider creates all sorts of types of VariantContexts for testing purposes.  Can be reused throughtout code for BCF, VCF, etc.
-- Created basic BCF2WriterCodec tests that consumes VariantContextTestProvider contexts, writes them to disk with BCF2 writer, and checks that they come back equals to the original VariantContexts. Actually worked for some complex tests in the first go
2012-05-24 10:57:01 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src -- Convenience constructor for VariantContextBuilder that creates a new one based on an existing builder 2012-05-24 10:57:01 -04:00
test -- Convenience constructor for VariantContextBuilder that creates a new one based on an existing builder 2012-05-24 10:57:01 -04:00