Guillermo del Angel f176c854c6 Swapping in logless Pair HMM for default usage with UG: ... -- Changed default HMM model. -- Removed check. -- Changed md5's: PL's in the high 100s change by a point or two due to new implementation. -- Resulting performance improvement is about 30 to 50% less runtime when using -glm INDEL.		2013-06-18 10:06:27 -04:00
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java	Swapping in logless Pair HMM for default usage with UG:	2013-06-18 10:06:27 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00