Geraldine Van der Auwera faef85841b Added GATKDocs fct to indicate default Read Filters for each tool ... -- Added getClazzAnnotations() as hub to retrieve various annotations values and class properties through reflection -- Added getReadFilters() method to retrieve Read Filter annotations -- getReadFilters() uses recursion to walk up the inheritance to also capture superclass annotations -- getClazzAnnotations() stores collected info in doc handler root, which is unit.forTemplate in Doclet -- Modified FreeMarker template to use the Readfilters info (displayed after arg table, before additional capabilities) -- Tadaaa :-) #GSATDG-63 resolve		2013-02-19 16:12:29 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Added GATKDocs fct to indicate default Read Filters for each tool	2013-02-19 16:12:29 -05:00
test	ActivityProfile and ActiveRegions respects engine interval boundaries	2013-02-18 10:40:25 -05:00