gatk3的最后一个经典版本3.8

Geraldine Van der Auwera faef85841b Added GATKDocs fct to indicate default Read Filters for each tool ... -- Added getClazzAnnotations() as hub to retrieve various annotations values and class properties through reflection -- Added getReadFilters() method to retrieve Read Filter annotations -- getReadFilters() uses recursion to walk up the inheritance to also capture superclass annotations -- getClazzAnnotations() stores collected info in doc handler root, which is unit.forTemplate in Doclet -- Modified FreeMarker template to use the Readfilters info (displayed after arg table, before additional capabilities) -- Tadaaa :-) #GSATDG-63 resolve		2013-02-19 16:12:29 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	ActivityProfile and ActiveRegions respects engine interval boundaries	2013-02-18 10:40:25 -05:00
public	Added GATKDocs fct to indicate default Read Filters for each tool	2013-02-19 16:12:29 -05:00
settings	Added GATKDocs fct to indicate default Read Filters for each tool	2013-02-19 16:12:29 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00