ebanks fac7ac5142 Don't print out 0 coverage (which is always 0) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1174 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-06 17:44:32 +00:00
..
examples	Update naming for consistency.	2009-06-30 22:03:21 +00:00
gatk	Don't print out 0 coverage (which is always 0)	2009-07-06 17:44:32 +00:00
indels	count X/N/etc. as mismatches for the NM attribute in the BAMs	2009-06-30 16:08:55 +00:00
piecemealannotator	Updated to use SecondaryBaseAnnotator class.	2009-06-30 16:08:43 +00:00
somaticcoverage	Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.	2009-06-18 21:29:30 +00:00
utils	Added a ROD (SangerSNP) for parsing the Sanger's chr20 pilot1 SNP calls.	2009-06-29 16:32:12 +00:00
ValidateSAM.java	Update to latest version of picard. Change imports in all classes dependent on picard public from import edu.mit.broad.picard... to import net.sf.picard...	2009-05-28 20:13:01 +00:00