gatk-3.8/java/src/org/broadinstitute/sting
ebanks fac7ac5142 Don't print out 0 coverage (which is always 0)
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1174 348d0f76-0448-11de-a6fe-93d51630548a
2009-07-06 17:44:32 +00:00
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gatk Cleanup emergency fixes for out-of-bounds issues in reference retrieval. Fix spelling mistakes. 2009-07-06 15:41:30 +00:00
playground Don't print out 0 coverage (which is always 0) 2009-07-06 17:44:32 +00:00
secondarybase A single class that can be handed reads for training and basecalling. When in training mode, we accumulate no more than 10000 reads and always replace the lowest-quality reads with superior quality reads. Thus, the training set always contains 10000 of the best reads available. After training is complete, the class can be interrogated to return the SQ tag for a given RawRead object. 2009-06-30 16:03:15 +00:00
utils Cleanup emergency fixes for out-of-bounds issues in reference retrieval. Fix spelling mistakes. 2009-07-06 15:41:30 +00:00