gatk-3.8/public/c++/VectorPairHMM/pairhmm-1-base.cc

30 lines
578 B
C++

//#define DEBUG 1
//#define DEBUG0_1 1
//#define DEBUG3 1
#include "headers.h"
#include "template.h"
#include "utils.h"
#include "LoadTimeInitializer.h"
using namespace std;
int main(int argc, char** argv)
{
if(argc < 2)
{
cerr << "Needs path to input file as argument\n";
exit(0);
}
bool use_old_read_testcase = false;
if(argc >= 3 && string(argv[2]) == "1")
use_old_read_testcase = true;
unsigned chunk_size = 10000;
if(argc >= 4)
chunk_size = strtol(argv[3],0,10);
do_compute(argv[1], use_old_read_testcase, chunk_size);
return 0;
}