Khalid Shakir faaef236ea Moved gsalib, R and other resources, Queue GATK extensions generator, Queue version java files.		2014-02-03 13:49:21 -05:00
..
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
gatk-framework/src/main/resources	Moved gsalib, R and other resources, Queue GATK extensions generator, Queue version java files.	2014-02-03 13:49:21 -05:00
gatk-queue-extgen/src/main/java/org/broadinstitute/sting/queue/extensions/gatk	Moved gsalib, R and other resources, Queue GATK extensions generator, Queue version java files.	2014-02-03 13:49:21 -05:00
gsalib/src/R	Moved gsalib, R and other resources, Queue GATK extensions generator, Queue version java files.	2014-02-03 13:49:21 -05:00
java	Moved gsalib, R and other resources, Queue GATK extensions generator, Queue version java files.	2014-02-03 13:49:21 -05:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework/src/main	Moved gsalib, R and other resources, Queue GATK extensions generator, Queue version java files.	2014-02-03 13:49:21 -05:00
scala	Merge remote-tracking branch 'origin/master' into mf_new_RBP	2013-12-19 10:42:20 -05:00
testdata	Fixed up and refactored what seems to be a useful private tool to create simulated reads around a VCF.	2014-01-15 13:49:31 -05:00