gatk3的最后一个经典版本3.8

Mark DePristo fa9b2a91d0 Bugfix for GSA-552 ... -- https://jira.broadinstitute.org/browse/GSA-552 -- User reports a null exception while using VariantsToVCF: http://gatkforums.broadinstitute.org/discussion/1461/nullpointerexception-converting-vcf3-to-vcf-using-variantstovcf The problem is that he left out an input VCF file for the --variant argument and the command-line argument parsing code didn't catch this, so we NPE out later on.		2012-10-26 16:34:16 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Update MD5s for PrintReads with BQSR Integration Test	2012-10-26 14:25:25 -04:00
public	Bugfix for GSA-552	2012-10-26 16:34:16 -04:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00