gatk3的最后一个经典版本3.8

David Roazen fa7605c643 Convert external.build.dir and external.dist.dir back to paths ... The previous push fixed the external classpath issue but broke external builds in a new way by changing the above from paths to properties. This was a mistake, since external builds require absolute, not relative, paths Thanks to akiezun for the bug report and patch		2012-08-15 23:04:10 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Disable general ploidy integration tests because they are running forever	2012-08-15 21:13:16 -04:00
public	Better docs for verbose output of Pileup	2012-08-15 21:55:08 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00