chartl 27651d8dc2 Oops. numReads is now called size ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2175 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-29 06:59:17 +00:00
..
alignment	Convenience changes. If no -BWT option is specified, pull the BWT location from the reference.	2009-11-23 22:46:05 +00:00
gatk	An iterator for Eric to use when injecting his new wrapping reads -- a stopgap solution for getting additional caching	2009-11-27 22:25:52 +00:00
playground	Oops. numReads is now called size	2009-11-29 06:59:17 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	Updated, optimized REadBackedPileup. Updated test that was breaking the build -- it created a pileup from reads without bases...	2009-11-25 23:30:39 +00:00