Mauricio Carneiro 1b75663178 BQSR Gatherer implementation and integration tests ... * restructured the hash tables into one class (RecalibrationReport) that has all the functionality for the different tables and key managers * optmized empirical qual calculation when merging recalibration reports * centralized the quality score quantization functionalities * unified the creating/loading of all the key manager/hash table structures. * added unit tests for the gatherer (disabled because gatk report needs to be sorted for automated testing) * added integration tests for BQSR and on-the-fly recalibration		2012-03-27 13:50:22 -05:00
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ActivityProfileUnitTest.java	BQSR Gatherer implementation and integration tests	2012-03-27 13:50:22 -05:00