Khalid Shakir 23e7f1bed9 When an interval list specifies overlapping intervals merge them before scattering.		2012-02-08 02:12:16 -05:00
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engine	When running Queue jobs locally, merge the stderr to the stdout log if the error file is NOT specified.	2012-01-10 16:10:25 -05:00
extensions	When an interval list specifies overlapping intervals merge them before scattering.	2012-02-08 02:12:16 -05:00
function	General improvements to Queue	2011-12-20 14:05:09 -05:00
library	During flanking interval creation merging overlapping flanks so that on scatter the list doesn't accidentally genotype the same site twice.	2011-11-17 13:56:42 -05:00
util	Support for NT testing (default up to 4) for CC and UG	2011-12-14 18:45:00 -05:00
QCommandLine.scala	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00
QException.scala	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
QScript.scala	Now captures the exechost in the job report	2011-08-28 12:05:56 -04:00
QScriptManager.scala	Embedding gsalib source and queueJobReport R scripts in the dist and package jars.	2011-10-24 15:58:34 -04:00
QSettings.scala	General improvements to Queue	2011-12-20 14:05:09 -05:00