Christopher Hartl f9cdc119af Added a method to ReadUtils that converts reads of the form 10S20M10S to 40M (just unclips the soft-clips). ... Be careful when using this - if you're writing a bam file it will be potentially written out of order (since the previous alignment start was at the M, not the S).		2011-09-21 18:16:42 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Added a method to ReadUtils that converts reads of the form 10S20M10S to 40M (just unclips the soft-clips).	2011-09-21 18:16:42 -04:00