Christopher Hartl f9cdc119af Added a method to ReadUtils that converts reads of the form 10S20M10S to 40M (just unclips the soft-clips). ... Be careful when using this - if you're writing a bam file it will be potentially written out of order (since the previous alignment start was at the M, not the S).		2011-09-21 18:16:42 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Added a method to ReadUtils that converts reads of the form 10S20M10S to 40M (just unclips the soft-clips).	2011-09-21 18:16:42 -04:00
test	Fix for dynamic type determination for bgzip files	2011-09-21 15:39:19 -04:00