gatk3的最后一个经典版本3.8

David Roazen f9ad8d4325 Merged bug fix from Stable into Unstable ... Conflicts: private/gsa-engineering/pdfgen/trigger_pdfgen.sh		2013-03-19 01:23:58 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Bug fix in assembly for edge case in which the extendPartialHaplotype function was filling in deletions in the middle of haplotypes.	2013-03-15 14:20:25 -04:00
public	fix typos in argument docs and in printed output in CoveredByNSamplesSites and rewrite an unaccurate comment	2013-03-18 13:54:21 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00