gatk3的最后一个经典版本3.8

Mauricio Carneiro f99bd5be6a Small fix to make the script more generic (thanks Yossi) ... GSA-710 #resolve		2013-01-18 10:06:50 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	1. Ryan and I noticed that the FisherStrand annotation was completely busted for indels with reduced reads; fixed.	2013-01-18 03:35:48 -05:00
public	I finally gave up on trying to get the Haplotype/Allele merging to work in the HaplotypeCaller.	2013-01-18 01:21:08 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00