gatk3的最后一个经典版本3.8

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Eric Banks f994220617 Update the allele remapping code to handle the new spanning deletion allele. Now that Ron updated the GATK so that we use star to represent spanning deletions, we need to catch those cases in the code that remaps alleles. Otherwise, we try to pad the stars and that's just bad. Added test from actual failing data.		2015-06-29 17:58:22 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Update the allele remapping code to handle the new spanning deletion allele.	2015-06-29 17:58:22 -04:00
public	Merge pull request #1019 from broadinstitute/rhl_var_index_param_gz	2015-06-17 14:30:20 -04:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00

The Genome Analysis Toolkit