gatk3的最后一个经典版本3.8

ebanks f978b04633 A very simple walker to print out (using the ROD's toString method) all of ... the RODs it sees. This is the easiest solution to get around the (temporary) bug of reads being seen multiple times by reads walkers when close intervals are passed to them (i.e. process full contigs and then use a ref walker to filter the ones within your intervals of choice) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1273 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-17 14:03:34 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Cleanup my pathetic prose.	2009-07-15 21:35:13 +00:00
java	A very simple walker to print out (using the ROD's toString method) all of	2009-07-17 14:03:34 +00:00
packages	Packaging cleanup.	2009-07-14 21:00:02 +00:00
perl	sortByRef now supports x:y location syntax	2009-07-07 16:42:40 +00:00
python	Actually listens to justPrint now	2009-07-15 16:52:46 +00:00
settings	Updates to picard public / private and sam.	2009-06-30 14:50:55 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	Derive examples from real data.	2009-07-10 04:21:37 +00:00
build.xml	Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.	2009-06-18 21:29:30 +00:00
ivy.xml	Add bcel and cleanup.	2009-06-17 19:28:04 +00:00