kshakir 7157cb9090 While bkill'ing on the shutdown thread Queue will no longer try to submit more jobs on the original thread. ... Updated pipeline output structure to current recommendations by Corin. Directories are now automatically before the function runs. Fixed several bugs with scatter gather binding when the script author needs to change the directories. Fixed bug with tracking of log files for CloneFunctions. More error handling and logging of exceptions (good test environment while LSF was down this early AM!) Removed cleanup utility for scatter gather. SG Output structure has changed significantly. Will need to discuss and find a better approach for Queue programatically deleting files. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4504 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-15 17:01:36 +00:00
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CollectionUtils.scala	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
CommandLineJob.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
EmailMessage.scala	While bkill'ing on the shutdown thread Queue will no longer try to submit more jobs on the original thread.	2010-10-15 17:01:36 +00:00
EmailSettings.scala	Added status email support with -statusTo. Will send emails on failure of an individual function or success/failure of the whole pipeline.	2010-10-14 15:58:52 +00:00
IOUtils.scala	While bkill'ing on the shutdown thread Queue will no longer try to submit more jobs on the original thread.	2010-10-15 17:01:36 +00:00
JobExitException.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
Logging.scala	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
LsfJob.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
LsfKillJob.scala	Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster.	2010-10-07 01:19:18 +00:00
PipelineUtils.scala	Somewhat major update. Changes:	2010-10-08 13:30:28 +00:00
ProcessController.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
ReflectionUtils.scala	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
Retry.scala	Emergency fix for Ryan:	2010-10-13 22:22:01 +00:00
RetryException.scala	Emergency fix for Ryan:	2010-10-13 22:22:01 +00:00
ScalaCompoundArgumentTypeDescriptor.scala	Command-line argument tagging is in, and the ROD system is hacked slightly to support the new syntax	2010-08-25 03:47:57 +00:00
ShellJob.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
SystemUtils.scala	Added status email support with -statusTo. Will send emails on failure of an individual function or success/failure of the whole pipeline.	2010-10-14 15:58:52 +00:00
TextFormatUtils.scala	Emergency fix for Ryan:	2010-10-13 22:22:01 +00:00