gatk-3.8/scala/src/org/broadinstitute/sting/queue
kshakir 81479229e1 QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output.
Re-logging the failed jobs and the path to their log files at the end of a run.
Added a parameter -bigMemQueue for the fullCallingPipeline.q instead of hardcoding gsa (gsa was backed up and it was actually faster to run on week).


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4520 348d0f76-0448-11de-a6fe-93d51630548a
2010-10-18 22:11:14 +00:00
..
engine QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output. 2010-10-18 22:11:14 +00:00
extensions Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
function QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output. 2010-10-18 22:11:14 +00:00
pipeline Scala protected is more akin to Java private than Java protected. Not typing these defs. 2010-10-08 19:36:23 +00:00
util While bkill'ing on the shutdown thread Queue will no longer try to submit more jobs on the original thread. 2010-10-15 17:01:36 +00:00
QCommandLine.scala QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output. 2010-10-18 22:11:14 +00:00
QException.scala Fix for Queue 2010-09-12 15:18:08 +00:00
QScript.scala Saving the order functions are added to in the QScript. Using the order during submission of ready jobs (but not currently dryrun) and during -status. 2010-10-15 20:00:35 +00:00
QScriptManager.scala Emergency fix for Ryan: 2010-10-13 22:22:01 +00:00
QSettings.scala Added status email support with -statusTo. Will send emails on failure of an individual function or success/failure of the whole pipeline. 2010-10-14 15:58:52 +00:00