Mark DePristo f8ef4332de Count the number of evaluations in AFResult; expand unit tests ... -- AFResult now tracks the number of evaluations (turns through the model calculation) so we can now compute the scaling of exact model itself as a function of n samples -- Added unittests for priors (flat and human) -- Discovered nasty general ploidy bug (enabled with Guillermo_FIXME)		2012-10-03 19:55:11 -07:00
..
R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	Count the number of evaluations in AFResult; expand unit tests	2012-10-03 19:55:11 -07:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Probably the GATK's most seen typo in the world	2012-10-02 13:34:37 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00