gatk3的最后一个经典版本3.8

Mark DePristo f8ef4332de Count the number of evaluations in AFResult; expand unit tests ... -- AFResult now tracks the number of evaluations (turns through the model calculation) so we can now compute the scaling of exact model itself as a function of n samples -- Added unittests for priors (flat and human) -- Discovered nasty general ploidy bug (enabled with Guillermo_FIXME)		2012-10-03 19:55:11 -07:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Count the number of evaluations in AFResult; expand unit tests	2012-10-03 19:55:11 -07:00
public	Count the number of evaluations in AFResult; expand unit tests	2012-10-03 19:55:11 -07:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00