Mark DePristo f8ad91b16f Reverting a bunch of bad -B type drops		2011-08-08 16:57:38 -04:00
..
annotator	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
beagle	--variants throughout integrationtests	2011-08-02 20:28:47 -04:00
coverage	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
diffengine	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
fasta	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
filters	Need to rename the integration test argument -mask to -maskName	2011-08-07 13:32:26 -04:00
genotyper	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
indels	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
phasing	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
qc	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
recalibration	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
validation	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
varianteval	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
variantrecalibration	Reverting a bunch of bad -B type drops	2011-08-08 16:57:38 -04:00
variantutils	Updated IntegrationTests to use the new type free format for VCF files	2011-08-08 15:04:38 -04:00
BAQIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ClipReadsWalkersIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PileupWalkerIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PrintReadsIntegrationTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PrintReadsWalkerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00